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MultiplePairwiseAlignmentsToOneSubject()
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Align multiple DNA pattern sequences to one subject |
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MultipleSequenceAlignmentDECIPHER()
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Have a Multiple Sequence Alignment calculated with DECIPHER, plotted as ggplot2 object |
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align_imgt_ref_to_TCR_seq()
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Align IMGTs reference sequences to your TCR sequence |
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attach_imgt_alleles()
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Find best matching IMGT reference alleles for TCR V and J gene segments |
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imgt_tcr_segment_prep()
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Prepare a data frame with TCR gene segment reference data from IMGT |
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pick_randomNames()
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Pick n random names from the randomNames package |
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read_cellranger_outs()
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Read necessary file from 10X Genomics' cellranger output and return a concatenated data frame |
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vdjdb_hits()
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Compare CDR3s from sequencing to known CDR3s in the vdjdb |