Have a Multiple Sequence Alignment calculated with DECIPHER, plotted as ggplot2 object

Have a Multiple Sequence Alignment calculated with DECIPHER, plotted as ggplot2 object

MultipleSequenceAlignmentDECIPHER(
  input.set,
  add.consensus.seq = T,
  print.disamb.cons.seq.border = T,
  collapse.duplicate.seqs = T,
  open.browser = F
)

Arguments

input.set	Vector of DNA sequences as character or as DNAStringSet()
add.consensus.seq	logical of a consensus sequence should be added to the alignment
print.disamb.cons.seq.border	logical if to print the borders of longest stretch of disambiguate consensus sequence
collapse.duplicate.seqs	collapse identical sequences in the input.set to one sequence before alignment
open.browser	open the browser via DECIPHERs command DECIPHER::BrowseSeqs in addition to having the plot returned

Value

a ggplot object of the multiple sequence alignment

Examples

if (FALSE) {

}