Standard report on magpix measurement

report_magpix(
  df,
  count_threshold = 30,
  meta_data,
  group_col = "group",
  out_folder
)

Arguments

df	the data frame returned by read_magpix; filter this df to focus on certain analytes or samples only
count_threshold	minimal bead count to include in the
meta_data	a data frame of meta_data; should contain a column named well_id for joining and a column named group_col (next argument) for grouping observations
group_col	column name in meta_data with values to group observations
out_folder	path to the folder to save plots and tables to

Value

a data frame of plots and tables may also be saved to out_folder if provided

Examples

if (FALSE) {
# get the path to the parent folder of a script
wd <- dirname(rstudioapi::getActiveDocumentContext()$path)
report_magpix(df = read_magpix('path_to_your_file.csv'),
count_threshold = 30,
meta_data = openxlsx::read.xlsx('path_to_meta_data_xlsx'),
out_folder = file.path(wd, "report"))
}