Retrieve groups within a flowjo workspace and associated samples (sampleID)

wsx_get_groups(
  ws,
  filter_AllSamples = T,
  collapse_groups = T,
  collapse_to = "list"
)

Arguments

ws: path to flowjo workspace or a parsed xml-document (xml2::read_xml(ws))
filter_AllSamples: logical whether to filter the All Samples Group in case the fcs file is also part of another group
collapse_groups: logical whether to collapse multiple group-belongings of samples into a list-column in the data frame
collapse_to: string how to collapse groups; to collapse to a list-column pass 'list'; to collapse to a string provide any separator string like ';', ',' or '-'

a data frame

if (FALSE) {
wsx_get_groups(ws)
}