Gates from gatingset for plotting with ggcyto

gs_get_gates(
  gs,
  n_bins = 50^2,
  quantile_lim_filter = c(1e-04, 0.9999),
  min_max_vals = c(0, 300),
  min_max_vals_scatter = c(0, 250000),
  x_statpos_name = 0.9,
  y_statpos_name = 0.9,
  x_statpos_pct = 0.9,
  y_statpos_pct = 0.1,
  statsize_name = 4,
  statsize_pct = 4
)

Arguments

gs: gs a gatingset, e.g. made with fcexpr::wsp_get_gs
n_bins: number of bins in total, will be used equally in x and y direction, bin size is adjusted to ranges in x and y direction
quantile_lim_filter: min,max quantiles of signal intensities to set axis limits to; use quantiles to exclude extreme values
min_max_vals: min,max required signal intensitiy for fluorescence channels of one event in order to condider it for axis limit calculation (to filter extreme values); in logicle transformation
min_max_vals_scatter: min,max required signal intensitiy for scatter channels of one event in order to condider it for axis limit calculation (to filter extreme values); in inverse transformation which is equal to logicle transformation (for scatter channels)
x_statpos_name: x-position for gate name labels
y_statpos_name: y-position for gate name labels
x_statpos_pct: x-position for gate percent labels
y_statpos_pct: y-position for gate percent labels
statsize_name: size of name label
statsize_pct: size of percent label

Value

a data frame to loop over and produce plots with ggcyto

Examples

if (FALSE) {
gates <- gs_get_gates(gs)
}